3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07922

Details:

PFam ID : PF07922

PFam Domain Description : Glycosyltransferase family 52

Number of Sequence in 50% Dataset : 66

Number of Sequence in Full Dataset : 88

Average sequence length: 245.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07922	Q4MV36_BACCE_31_293	93.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07922	Q4MV36_BACCE_31_293	98.8

Sequence based PCA Plot of the family - PF07922 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=62 Length=8
Motif4 Start=191 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay