3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07921

Details:

PFam ID : PF07921

PFam Domain Description : Fibroin P25

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 22

Average sequence length: 88.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07921	B5EHG8_GEOBB_324_372	30

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07921	D5JFL6_9CAUD_374_491	95.2

Sequence based PCA Plot of the family - PF07921 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay