3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07918

Details:

PFam ID : PF07918

PFam Domain Description : CAP160 repeat

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 16

Average sequence length: 24.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07918	Q06WH8_SALTY_1_90	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07918	Q9SWB3_SOYBN_3_27	100

Sequence based PCA Plot of the family - PF07918 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay