3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07916

Details:

PFam ID : PF07916

PFam Domain Description : TraG-like protein, N-terminal region

Number of Sequence in 50% Dataset : 100

Number of Sequence in Full Dataset : 209

Average sequence length: 416.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07916	Q06WH8_SALTY_1_90	95.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07916	Q8L262_PROVU_5_481	100

Sequence based PCA Plot of the family - PF07916 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=75 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay