3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07915

Details:

PFam ID : PF07915

PFam Domain Description : Glucosidase II beta subunit-like protein

Number of Sequence in 50% Dataset : 97

Number of Sequence in Full Dataset : 248

Average sequence length: 85.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07915	A0BVD2_PARTE_98_177	97.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07915	A7SE51_NEMVE_70_258	97.5

Sequence based PCA Plot of the family - PF07915 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=37 Length=8
Motif2 Start=28 Length=8
Motif3 Start=10 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay