3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07908

Details:

PFam ID : PF07908

PFam Domain Description : D-aminoacylase, C-terminal region

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 441

Average sequence length: 47.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07908	D7PJP6_9FIRM_56_101	61.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07908	A4CAD0_9GAMM_436_483	99.5

Sequence based PCA Plot of the family - PF07908 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=39 Length=8
Motif2 Start=5 Length=8
Motif3 Start=18 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay