3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07907

Details:

PFam ID : PF07907

PFam Domain Description : YibE/F-like protein

Number of Sequence in 50% Dataset : 81

Number of Sequence in Full Dataset : 354

Average sequence length: 235.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07907	A6NXJ7_9BACE_134_379	91.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07907	A6NXJ7_9BACE_134_379	100

Sequence based PCA Plot of the family - PF07907 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=22 Length=8
Motif2 Start=13 Length=8
Motif3 Start=42 Length=8
Motif4 Start=4 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay