3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07904

Details:

PFam ID : PF07904

PFam Domain Description : Chromatin modification-related protein EAF7

Number of Sequence in 50% Dataset : 32

Number of Sequence in Full Dataset : 100

Average sequence length: 90.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07904	A5DAM2_PICGU_10_158	77.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07904	A5DAM2_PICGU_10_158	100

Sequence based PCA Plot of the family - PF07904 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=44 Length=11
Motif3 Start=15 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay