3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07899

Details:

PFam ID : PF07899

PFam Domain Description : Frigida-like protein

Number of Sequence in 50% Dataset : 69

Number of Sequence in Full Dataset : 130

Average sequence length: 219.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07899	C7IW80_ORYSJ_97_231	69.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07899	C5WTC5_SORBI_227_581	100

Sequence based PCA Plot of the family - PF07899 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=11
Motif2 Start=1 Length=8
Motif3 Start=158 Length=8
Motif4 Start=306 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay