3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07887

Details:

PFam ID : PF07887

PFam Domain Description : Calmodulin binding protein-like

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 116

Average sequence length: 232.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07887	C6J0Y0_9BACL_2_56	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07887	Q2QZW5_ORYSJ_135_435	99.1

Sequence based PCA Plot of the family - PF07887 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=25 Length=8
Motif3 Start=86 Length=8
Motif4 Start=50 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay