3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07886

Details:

PFam ID : PF07886

PFam Domain Description : BA14K-like protein

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 151

Average sequence length: 30.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07886	C6J0Y0_9BACL_2_56	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07886	B9J711_AGRRK_108_138	100

Sequence based PCA Plot of the family - PF07886 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=13 Length=8
Motif2 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay