3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07885

Details:

PFam ID : PF07885

PFam Domain Description : Ion channel

Number of Sequence in 50% Dataset : 589

Number of Sequence in Full Dataset : 3415

Average sequence length: 82.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07885	C6J0Y0_9BACL_2_56	93.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07885	Q4S8S9_TETNG_135_211	99.9

Sequence based PCA Plot of the family - PF07885 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=19 Length=18
Motif2 Start=1 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay