3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07884

Details:

PFam ID : PF07884

PFam Domain Description : Vitamin K epoxide reductase family

Number of Sequence in 50% Dataset : 130

Number of Sequence in Full Dataset : 419

Average sequence length: 134.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07884	C9NVY9_9VIBR_2_52	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07884	E9PLN8_HUMAN_8_115	100

Sequence based PCA Plot of the family - PF07884 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=12 Length=18
Motif3 Start=143 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay