3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07883

Details:

PFam ID : PF07883

PFam Domain Description : Cupin domain

Number of Sequence in 50% Dataset : 1277

Number of Sequence in Full Dataset : 7642

Average sequence length: 70.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07883	C9NVY9_9VIBR_2_52	95.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07883	D8J7F3_HALJB_1_48	99.9

Sequence based PCA Plot of the family - PF07883 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=38

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay