3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07882

Details:

PFam ID : PF07882

PFam Domain Description : L-fucose isomerase, second N-terminal domain

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 110

Average sequence length: 168.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07882	D6PCI0_9BACT_179_295	22.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07882	Q9HH25_THELI_179_337	100

Sequence based PCA Plot of the family - PF07882 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=121 Length=8
Motif3 Start=6 Length=8
Motif4 Start=147 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay