3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07881

Details:

PFam ID : PF07881

PFam Domain Description : L-fucose isomerase, first N-terminal domain

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 86

Average sequence length: 163.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07881	D4CNB6_9FIRM_1_170	12.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07881	E4CU29_PROAC_1_95	100

Sequence based PCA Plot of the family - PF07881 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=131 Length=8
Motif2 Start=104 Length=8
Motif3 Start=13 Length=8
Motif4 Start=77 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay