3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07880

Details:

PFam ID : PF07880

PFam Domain Description : Bacteriophage T4 gp9/10-like protein

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 53

Average sequence length: 209.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07880	E1A1H5_9CAUD_1_177	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07880	Q6WHF9_BPKV4_2_260	100

Sequence based PCA Plot of the family - PF07880 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=15 Length=28

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay