3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07875

Details:

PFam ID : PF07875

PFam Domain Description : Coat F domain

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 223

Average sequence length: 63.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07875	E7M4W8_9BACL_1_49	74.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07875	A6TTF0_ALKMQ_35_101	99.0

Sequence based PCA Plot of the family - PF07875 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=24 Length=8
Motif4 Start=52 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay