3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07873

Details:

PFam ID : PF07873

PFam Domain Description : YabP family

Number of Sequence in 50% Dataset : 55

Number of Sequence in Full Dataset : 266

Average sequence length: 66.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07873	A8RB96_9FIRM_10_81	38.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07873	A8RB96_9FIRM_10_81	100

Sequence based PCA Plot of the family - PF07873 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=45 Length=8
Motif3 Start=64 Length=8
Motif4 Start=20 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay