3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07858

Details:

PFam ID : PF07858

PFam Domain Description : Limonene-1,2-epoxide hydrolase catalytic domain

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 54

Average sequence length: 117.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07858	A0PSC1_MYCUA_95_155	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07858	E6JBV5_9ACTO_1_127	100

Sequence based PCA Plot of the family - PF07858 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=29 Length=8
Motif2 Start=20 Length=8
Motif3 Start=11 Length=8
Motif4 Start=46 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay