3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07857

Details:

PFam ID : PF07857

PFam Domain Description : CEO family (DUF1632)

Number of Sequence in 50% Dataset : 51

Number of Sequence in Full Dataset : 91

Average sequence length: 209.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07857	B0ELA4_ENTDI_13_332	78

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07857	D2UZ96_NAEGR_50_340	100

Sequence based PCA Plot of the family - PF07857 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=11
Motif2 Start=1 Length=8
Motif3 Start=288 Length=8
Motif4 Start=25 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay