3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07842

Details:

PFam ID : PF07842

PFam Domain Description : GC-rich sequence DNA-binding factor-like protein

Number of Sequence in 50% Dataset : 96

Number of Sequence in Full Dataset : 229

Average sequence length: 237.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07842	A1XDC1_TETTH_577_845	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07842	D2UZ34_NAEGR_399_675	100

Sequence based PCA Plot of the family - PF07842 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=251 Length=8
Motif2 Start=264 Length=8
Motif3 Start=275 Length=8
Motif4 Start=194 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay