3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07837

Details:

PFam ID : PF07837

PFam Domain Description : Formiminotransferase domain, N-terminal subdomain

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 183

Average sequence length: 173.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07837	D6PB17_9ARCH_1_133	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07837	C1E2A7_MICSR_17_214	100

Sequence based PCA Plot of the family - PF07837 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=133 Length=8
Motif2 Start=190 Length=8
Motif3 Start=92 Length=8
Motif4 Start=3 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay