3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07836

Details:

PFam ID : PF07836

PFam Domain Description : DmpG-like communication domain

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 174

Average sequence length: 64.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07836	B5KC29_9RHOB_268_332	10

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07836	F2LIJ9_BURGA_265_330	98.8

Sequence based PCA Plot of the family - PF07836 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=14 Length=17
Motif2 Start=1 Length=8
Motif3 Start=49 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay