3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07835

Details:

PFam ID : PF07835

PFam Domain Description : Bacterial aa3 type cytochrome c oxidase subunit IV

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 112

Average sequence length: 43.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07835	F1ZA36_9SPHN_2_41	40

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07835	F1ZA36_9SPHN_2_41	94.5

Sequence based PCA Plot of the family - PF07835 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=32 Length=8
Motif2 Start=23 Length=8
Motif3 Start=14 Length=8
Motif4 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay