3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07833

Details:

PFam ID : PF07833

PFam Domain Description : Copper amine oxidase N-terminal domain

Number of Sequence in 50% Dataset : 640

Number of Sequence in Full Dataset : 1293

Average sequence length: 85.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07833	B2A617_NATTJ_180_219	95.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07833	F2JIN1_9FIRM_333_404	99.9

Sequence based PCA Plot of the family - PF07833 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=43 Length=8
Motif4 Start=56 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay