3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07825

Details:

PFam ID : PF07825

PFam Domain Description : Excisionase-like protein

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 44

Average sequence length: 74.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07825	A1JLQ4_YERE8_3_88	5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07825	A1JLQ4_YERE8_3_88	100

Sequence based PCA Plot of the family - PF07825 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=34 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay