3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07823

Details:

PFam ID : PF07823

PFam Domain Description : Cyclic phosphodiesterase-like protein

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 76

Average sequence length: 179.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07823	A2BXH7_PROM5_1_169	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07823	B8P1N6_POSPM_1_199	100

Sequence based PCA Plot of the family - PF07823 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=115 Length=8
Motif3 Start=35 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay