3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07821

Details:

PFam ID : PF07821

PFam Domain Description : Alpha-amylase C-terminal beta-sheet domain

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 114

Average sequence length: 61.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07821	B8I9J3_METNO_410_478	55.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07821	C1MYV4_MICPC_337_418	100

Sequence based PCA Plot of the family - PF07821 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=27 Length=8
Motif2 Start=1 Length=8
Motif3 Start=18 Length=8
Motif4 Start=60 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay