3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07820

Details:

PFam ID : PF07820

PFam Domain Description : TraC-like protein

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 41

Average sequence length: 84.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07820	D2YPG9_VIBMI_203_379	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07820	B1M956_METRJ_4_119	100

Sequence based PCA Plot of the family - PF07820 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay