3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07815

Details:

PFam ID : PF07815

PFam Domain Description : Abl-interactor HHR

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 54

Average sequence length: 74.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07815	A2A621_MOUSE_1_53	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07815	Q4V806_XENLA_109_187	100

Sequence based PCA Plot of the family - PF07815 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=19 Length=8
Motif4 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay