3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07813

Details:

PFam ID : PF07813

PFam Domain Description : LTXXQ motif family protein

Number of Sequence in 50% Dataset : 199

Number of Sequence in Full Dataset : 440

Average sequence length: 97.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07813	O27069_METTH_81_113	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07813	D2Z6Q1_9BACT_50_149	87

Sequence based PCA Plot of the family - PF07813 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=43 Length=8
Motif2 Start=34 Length=8
Motif3 Start=13 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay