3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07812

Details:

PFam ID : PF07812

PFam Domain Description : TfuA-like protein

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 84

Average sequence length: 115.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07812	O27069_METTH_81_113	12.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07812	Q7NL28_GLOVI_56_174	100

Sequence based PCA Plot of the family - PF07812 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=25 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay