3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07806

Details:

PFam ID : PF07806

PFam Domain Description : Nodule-specific GRP repeat

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 14

Average sequence length: 34.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07806	Q8S2U4_MEDSA_161_194	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07806	Q8S2U4_MEDSA_161_194	92.3

Sequence based PCA Plot of the family - PF07806 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=18 Length=8
Motif2 Start=9 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay