3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07803

Details:

PFam ID : PF07803

PFam Domain Description : GSG1-like protein

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 32

Average sequence length: 115.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07803	Q4SCG5_TETNG_5_136	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07803	Q4SCG5_TETNG_5_136	100

Sequence based PCA Plot of the family - PF07803 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=16 Length=27
Motif2 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay