3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07792

Details:

PFam ID : PF07792

PFam Domain Description : Docking domain of Afi1 for Arf3 in vesicle trafficking

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 125

Average sequence length: 58.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07792	D2V5X0_NAEGR_179_243	84.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07792	Q17GP2_AEDAE_7_71	100

Sequence based PCA Plot of the family - PF07792 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=56 Length=8
Motif2 Start=8 Length=18
Motif3 Start=34 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay