3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07779

Details:

PFam ID : PF07779

PFam Domain Description : 10 TM Acyl Transferase domain found in Cas1p

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 109

Average sequence length: 361.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07779	C1NAH6_MICPC_64_266	72.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07779	E9C8Z6_9EUKA_458_989	100

Sequence based PCA Plot of the family - PF07779 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=154 Length=8
Motif3 Start=20 Length=8
Motif4 Start=72 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay