3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07777

Details:

PFam ID : PF07777

PFam Domain Description : G-box binding protein MFMR

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 97

Average sequence length: 164.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07777	Q0GPI6_SOYBN_1_69	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07777	Q6Z2L2_ORYSJ_1_129	96.8

Sequence based PCA Plot of the family - PF07777 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=41 Length=8
Motif4 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay