3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07776

Details:

PFam ID : PF07776

PFam Domain Description : Zinc-finger associated domain (zf-AD)

Number of Sequence in 50% Dataset : 642

Number of Sequence in Full Dataset : 1574

Average sequence length: 74.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07776	B0X6F9_CULQU_312_398	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07776	C3Y827_BRAFL_24_108	100

Sequence based PCA Plot of the family - PF07776 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=70 Length=18
Motif2 Start=1 Length=8
Motif3 Start=56 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay