3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07769

Details:

PFam ID : PF07769

PFam Domain Description : psiF repeat

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 149

Average sequence length: 33.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07769	A1K1V7_AZOSB_22_47	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07769	A1K1V7_AZOSB_22_47	100

Sequence based PCA Plot of the family - PF07769 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=17 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay