3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07767

Details:

PFam ID : PF07767

PFam Domain Description : Nop53 (60S ribosomal biogenesis)

Number of Sequence in 50% Dataset : 106

Number of Sequence in Full Dataset : 183

Average sequence length: 287.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07767	E2LFB3_MONPE_1_248	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07767	E2LFB3_MONPE_1_248	100

Sequence based PCA Plot of the family - PF07767 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=32 Length=8
Motif4 Start=223 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay