3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07766

Details:

PFam ID : PF07766

PFam Domain Description : LETM1-like protein

Number of Sequence in 50% Dataset : 82

Number of Sequence in Full Dataset : 295

Average sequence length: 197.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07766	E9C2L7_9EUKA_72_351	75.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07766	D8QCZ3_SCHCM_160_284	97.9

Sequence based PCA Plot of the family - PF07766 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay