3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07765

Details:

PFam ID : PF07765

PFam Domain Description : KIP1-like protein

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 76

Average sequence length: 64.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07765	D8SW70_SELML_6_54	14.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07765	B9GFI0_POPTR_15_82	92

Sequence based PCA Plot of the family - PF07765 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=29 Length=8
Motif2 Start=20 Length=8
Motif3 Start=11 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay