3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07754

Details:

PFam ID : PF07754

PFam Domain Description : Domain of unknown function (DUF1610)

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 95

Average sequence length: 20.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07754	A3MY11_PYRCJ_47_62	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07754	Q8ZYN6_PYRAE_16_39	82

Sequence based PCA Plot of the family - PF07754 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=12 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay