3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07750

Details:

PFam ID : PF07750

PFam Domain Description : GcrA cell cycle regulator

Number of Sequence in 50% Dataset : 62

Number of Sequence in Full Dataset : 225

Average sequence length: 141.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07750	E0JUU9_RHIME_72_207	70.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07750	Q82C32_STRAW_4_142	100

Sequence based PCA Plot of the family - PF07750 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=27 Length=8
Motif2 Start=1 Length=8
Motif3 Start=15 Length=11
Motif4 Start=43 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay