3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07748

Details:

PFam ID : PF07748

PFam Domain Description : Glycosyl hydrolases family 38 C-terminal domain

Number of Sequence in 50% Dataset : 386

Number of Sequence in Full Dataset : 927

Average sequence length: 411.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07748	C7PHH6_CHIPD_541_954	84.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07748	A9U5M3_PHYPA_321_502	99.7

Sequence based PCA Plot of the family - PF07748 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=2 Length=8
Motif2 Start=14 Length=8
Motif3 Start=34 Length=8
Motif4 Start=222 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay