3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07745

Details:

PFam ID : PF07745

PFam Domain Description : Glycosyl hydrolase family 53

Number of Sequence in 50% Dataset : 73

Number of Sequence in Full Dataset : 261

Average sequence length: 312.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07745	D2KFN2_9FIRM_51_157	90.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07745	F2LDD4_BURGA_175_391	100

Sequence based PCA Plot of the family - PF07745 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=31 Length=8
Motif2 Start=134 Length=8
Motif3 Start=255 Length=11
Motif4 Start=342 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay