3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07743

Details:

PFam ID : PF07743

PFam Domain Description : HSCB C-terminal oligomerisation domain

Number of Sequence in 50% Dataset : 112

Number of Sequence in Full Dataset : 404

Average sequence length: 76.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07743	Q4RTZ0_TETNG_116_169	77.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07743	Q5DEH9_SCHJA_11_100	100

Sequence based PCA Plot of the family - PF07743 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=3 Length=27
Motif2 Start=60 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay