3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07741

Details:

PFam ID : PF07741

PFam Domain Description : Brf1-like TBP-binding domain

Number of Sequence in 50% Dataset : 51

Number of Sequence in Full Dataset : 138

Average sequence length: 97.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07741	A0DUG6_PARTE_336_427	56

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07741	E7RAF3_PICAD_411_531	100

Sequence based PCA Plot of the family - PF07741 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=21 Length=8
Motif4 Start=81 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay