3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07739

Details:

PFam ID : PF07739

PFam Domain Description : TipAS antibiotic-recognition domain

Number of Sequence in 50% Dataset : 147

Number of Sequence in Full Dataset : 588

Average sequence length: 113.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07739	D3ALE1_9CLOT_6_64	56.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07739	B8FXC9_DESHD_155_250	98.8

Sequence based PCA Plot of the family - PF07739 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=37

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay